#SubjectID Pos GeneID TranscriptID GeneSymbol Protein ProteinPos Mut VariantType HLA MutPeptide MutAFF MutRank RefPeptide RefAFF RefRank ld(TPM + 1) Patient_1 1:12884990 ENSG00000204513 ENST00000535591 PRAMEF11 ENSP00000439551 374 P/L missense_variant HLA-A02:01 NLCLELYLA 357.5 2.50 NLCLELYPA 81.3 0.90 8.3142614766383 Patient_1 1:12884990 ENSG00000204513 ENST00000535591 PRAMEF11 ENSP00000439551 374 P/L missense_variant HLA-A02:01 YLAPQESYGA 103.8 1.10 YPAPQESYGA 25807.7 30.00 8.3142614766383 Patient_1 1:12884990 ENSG00000204513 ENST00000535591 PRAMEF11 ENSP00000439551 374 P/L missense_variant HLA-A02:01 ILKNLCLELYL 207.7 1.70 ILKNLCLELYP 15258.2 18.00 8.3142614766383 Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 SLYNFLNL 293.5 2.00 SLYNLLNL 497.0 3.00 12.4336297749156 Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 SLYNFLNLT 28.5 0.40 SLYNLLNLT 80.3 0.90 12.4336297749156 Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 ASLYNFLNLT 216.3 1.70 ASLYNLLNLT 514.1 3.00 12.4336297749156 Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 SLYNFLNLTA 19.9 0.30 SLYNLLNLTA 43.3 0.60 12.4336297749156 Patient_1 2:99449431 ENSG00000196872 ENST00000397899 KIAA1211L ENSP00000380996 90 A/V missense_variant HLA-A02:01 VLSHDSIFI 25.4 0.40 ALSHDSIFI 30.9 0.40 None Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 SLYNFLNLTAL 168.1 1.50 SLYNLLNLTAL 391.4 2.50 12.4336297749156 Patient_1 2:74466656 ENSG00000188687 ENST00000377634 SLC4A5 ENSP00000366861 709 L/F missense_variant HLA-A02:01 FLNLTALDWSL 31.7 0.50 LLNLTALDWSL 351.6 2.50 12.4336297749156 Patient_1 2:99449431 ENSG00000196872 ENST00000397899 KIAA1211L ENSP00000380996 90 A/V missense_variant HLA-A02:01 RVLSHDSIFI 239.5 1.80 RALSHDSIFI 388.2 2.50 None Patient_1 2:100171163 ENSG00000144218 ENST00000356421 AFF3 ENSP00000348793 1131 P/L missense_variant HLA-A02:01 AQAPSLWGA 37.7 0.50 AQAPSPWGA 547.5 3.00 16.3418089314444 Patient_1 2:166170441 ENSG00000136531 ENST00000357398 SCN2A ENSP00000349973 402 M/I missense_variant HLA-A02:01 YIIFFVLVI 435.9 2.50 YMIFFVLVI 61.2 0.70 14.2197206208586 Patient_1 3:151012780 ENSG00000138271 ENST00000260843 GPR87 ENSP00000260843 85 V/A missense_variant HLA-A02:01 FIFYLKNIVA 499.9 3.00 FIFYLKNIVV 111.4 1.10 9.81405207185394 Patient_1 3:151012780 ENSG00000138271 ENST00000260843 GPR87 ENSP00000260843 85 V/A missense_variant HLA-A02:01 YLKNIVAADL 290.3 2.00 YLKNIVVADL 170.0 1.50 9.81405207185394 Patient_1 3:151012780 ENSG00000138271 ENST00000260843 GPR87 ENSP00000260843 85 V/A missense_variant HLA-A02:01 IVAADLIMTL 223.3 1.70 IVVADLIMTL 222.2 1.70 9.81405207185394 Patient_1 3:173998941 ENSG00000169760 ENST00000457714 NLGN1 ENSP00000392500 774 P/S missense_variant HLA-A02:01 SLMTPNTITM 216.2 1.70 PLMTPNTITM 2643.1 6.50 16.3470884251792 Patient_1 3:195512548 ENSG00000145113 ENST00000463781 MUC4 ENSP00000417498 1968 S/F missense_variant HLA-A02:01 FLPVTDASSV 110.5 1.10 SLPVTDASSV 1103.3 4.00 11.9758694578424 Patient_1 4:62598499 ENSG00000150471 ENST00000514591 LPHN3 ENSP00000422533 141 G/E missense_variant HLA-A02:01 FLCPGLLKEV 13.4 0.17 FLCPGLLKGV 14.8 0.20 14.4091456040822 Patient_1 4:62598499 ENSG00000150471 ENST00000514591 LPHN3 ENSP00000422533 141 G/E missense_variant HLA-A02:01 VFLCPGLLKEV 114.6 1.10 VFLCPGLLKGV 161.1 1.40 14.4091456040822 Patient_1 4:62598499 ENSG00000150471 ENST00000514591 LPHN3 ENSP00000422533 141 G/E missense_variant HLA-A02:01 FLCPGLLKEVY 236.6 1.80 FLCPGLLKGVY 346.6 2.50 14.4091456040822 Patient_1 4:111441521 ENSG00000138792 ENST00000265162 ENPEP ENSP00000265162 576 G/S missense_variant,splice_region_variant HLA-A02:01 LSYTWNIPV 83.8 0.90 LGYTWNIPV 611.4 3.00 12.243578643147 Patient_1 4:111441521 ENSG00000138792 ENST00000265162 ENPEP ENSP00000265162 576 G/S missense_variant,splice_region_variant HLA-A02:01 DLSYTWNIPV 395.6 2.50 DLGYTWNIPV 407.0 2.50 12.243578643147 Patient_1 4:158257685 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 544 Y/H missense_variant HLA-A02:01 FLDPLAHEI 3.3 0.01 FLDPLAYEI 2.6 0.01 8.6555629218177 Patient_1 4:158257685 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 544 Y/H missense_variant HLA-A02:01 SFLDPLAHEI 36.0 0.50 SFLDPLAYEI 16.7 0.25 8.6555629218177 Patient_1 4:158257685 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 544 Y/H missense_variant HLA-A02:01 FLDPLAHEIW 81.3 0.90 FLDPLAYEIW 33.0 0.50 8.6555629218177 Patient_1 4:158257893 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 613 S/L missense_variant HLA-A02:01 FMQQGCDIL 82.0 0.90 FMQQGCDIS 3569.9 7.50 8.6555629218177 Patient_1 4:158257685 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 544 Y/H missense_variant HLA-A02:01 FSFLDPLAHEI 121.0 1.20 FSFLDPLAYEI 48.7 0.60 8.6555629218177 Patient_1 4:158257685 ENSG00000120251 ENST00000296526 GRIA2 ENSP00000296526 544 Y/H missense_variant HLA-A02:01 FLDPLAHEIWM 195.8 1.60 FLDPLAYEIWM 100.7 1.10 8.6555629218177 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 AMVHYLMIL 28.0 0.40 AMVHYLMVL 22.5 0.30 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 LMILSANWA 346.8 2.50 LMVLSANWA 875.6 3.50 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 ILSANWAYV 8.4 0.09 VLSANWAYV 13.7 0.17 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 LMILSANWAYV 146.4 1.30 LMVLSANWAYV 320.5 2.50 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 IAMVHYLMIL 221.5 1.70 IAMVHYLMVL 168.9 1.50 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 YLMILSANWA 73.4 0.80 YLMVLSANWA 63.0 0.80 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 MILSANWAYV 11.4 0.15 MVLSANWAYV 17.1 0.25 12.700764808098 Patient_1 4:176556193 ENSG00000150625 ENST00000280187 GPM6A ENSP00000280187 234 V/I missense_variant HLA-A02:01 ILSANWAYVK 398.5 2.50 VLSANWAYVK 808.9 3.50 12.700764808098 Patient_1 5:132198248 ENSG00000164404 ENST00000378673 GDF9 ENSP00000367942 133 G/E missense_variant,splice_region_variant HLA-A02:01 QVTEILPSV 61.4 0.80 QVTGILPSV 163.0 1.40 11.7858202472076 Patient_1 5:140710490 ENSG00000204956 ENST00000517417 PCDHGA1 ENSP00000431083 80 R/T missense_variant HLA-A02:01 FALNPTSGSL 433.5 2.50 FALNPRSGSL 1863.9 5.50 14.4218873100786 Patient_1 5:177638967 ENSG00000175309 ENST00000308158 PHYKPL ENSP00000310978 436 M/I missense_variant HLA-A02:01 KLDAILTDI 54.1 0.70 KLDAILTDM 256.2 1.90 None Patient_1 5:177638967 ENSG00000175309 ENST00000308158 PHYKPL ENSP00000310978 436 M/I missense_variant HLA-A02:01 ILTDIEEKV 22.6 0.30 ILTDMEEKV 36.1 0.50 None Patient_1 5:177638967 ENSG00000175309 ENST00000308158 PHYKPL ENSP00000310978 436 M/I missense_variant HLA-A02:01 AILTDIEEKV 277.2 1.90 AILTDMEEKV 346.4 2.50 None Patient_1 5:180335808 ENSG00000113303 ENST00000340184 BTNL8 ENSP00000342197 91 S/F missense_variant HLA-A02:01 FIAEGRISL 43.1 0.60 SIAEGRISL 736.6 3.50 10.2168307201136 Patient_1 6:38743720 ENSG00000124721 ENST00000359357 DNAH8 ENSP00000352312 435 G/D missense_variant HLA-A02:01 KINDLEVQI 229.7 1.80 KINGLEVQI 949.6 4.00 5.15560757871302 Patient_1 6:38743720 ENSG00000124721 ENST00000359357 DNAH8 ENSP00000352312 435 G/D missense_variant HLA-A02:01 FMTKINDLEV 24.9 0.40 FMTKINGLEV 29.0 0.40 5.15560757871302 Patient_1 6:38743720 ENSG00000124721 ENST00000359357 DNAH8 ENSP00000352312 435 G/D missense_variant HLA-A02:01 FLDFMTKINDL 452.1 2.50 FLDFMTKINGL 102.1 1.10 5.15560757871302 Patient_1 6:38743720 ENSG00000124721 ENST00000359357 DNAH8 ENSP00000352312 435 G/D missense_variant HLA-A02:01 DFMTKINDLEV 480.3 3.00 DFMTKINGLEV 575.6 3.00 5.15560757871302 Patient_1 7:137363398 ENSG00000157680 ENST00000288490 DGKI ENSP00000288490 171 E/K missense_variant,splice_region_variant HLA-A02:01 TLDWSKNAV 374.5 2.50 TLDWSENAV 109.7 1.10 14.2366271472482 Patient_1 7:143826719 ENSG00000221938 ENST00000408899 OR2A14 ENSP00000386137 172 E/K missense_variant HLA-A02:01 KINHFFCEI 54.5 0.70 EINHFFCEI 3151.0 7.00 9.90415439598397 Patient_1 7:143826719 ENSG00000221938 ENST00000408899 OR2A14 ENSP00000386137 172 E/K missense_variant HLA-A02:01 SLPFCGPHKI 150.8 1.40 SLPFCGPHEI 38.9 0.50 9.90415439598397 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 KLFEFLVYG 29.0 0.40 KLFEFLVHG 73.2 0.80 19.225383977755 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 SKLFEFLVYG 241.4 1.80 SKLFEFLVHG 663.5 3.50 19.225383977755 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 KLFEFLVYGV 3.0 0.01 KLFEFLVHGV 3.5 0.01 19.225383977755 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 FLVYGVRPGM 122.5 1.20 FLVHGVRPGM 122.9 1.20 19.225383977755 Patient_1 8:75272465 ENSG00000104381 ENST00000220822 GDAP1 ENSP00000220822 135 A/V missense_variant HLA-A02:01 LLDSLPMDV 24.9 0.40 LLDSLPMDA 502.4 3.00 16.8615594857316 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 SKLFEFLVYGV 14.0 0.17 SKLFEFLVHGV 17.8 0.25 19.225383977755 Patient_1 7:150945579 ENSG00000082014 ENST00000262188 SMARCD3 ENSP00000262188 24 H/Y missense_variant HLA-A02:01 KLFEFLVYGVR 28.4 0.40 KLFEFLVHGVR 38.8 0.50 19.225383977755 Patient_1 8:75272465 ENSG00000104381 ENST00000220822 GDAP1 ENSP00000220822 135 A/V missense_variant HLA-A02:01 ELLDSLPMDV 84.0 0.90 ELLDSLPMDA 874.7 3.50 16.8615594857316 Patient_1 8:143425411 ENSG00000171045 ENST00000307180 TSNARE1 ENSP00000303437 221 L/F missense_variant HLA-A02:01 KPQALAFTPV 373.6 2.50 KPQALALTPV 275.3 1.90 17.0831572612426 Patient_1 8:143425411 ENSG00000171045 ENST00000307180 TSNARE1 ENSP00000303437 221 L/F missense_variant HLA-A02:01 ALAFTPVEQV 111.8 1.10 ALALTPVEQV 195.8 1.60 17.0831572612426 Patient_1 10:6392379 ENSG00000212743 ENST00000391437 DKFZP667F0711 ENSP00000375259 34 P/S missense_variant HLA-A02:01 RLLKHIFST 24.6 0.40 RLLKHIFPT 11.3 0.15 None Patient_1 10:6392379 ENSG00000212743 ENST00000391437 DKFZP667F0711 ENSP00000375259 34 P/S missense_variant HLA-A02:01 ARLLKHIFST 307.4 2.50 ARLLKHIFPT 118.3 1.20 None Patient_1 10:75874553 ENSG00000035403 ENST00000211998 VCL ENSP00000211998 1052 V/I missense_variant,splice_region_variant HLA-A02:01 LQICERIPTI 308.3 2.50 LQVCERIPTI 769.1 3.50 19.4658453643479 Patient_1 11:92533381 ENSG00000165323 ENST00000298047 FAT3 ENSP00000298047 2401 S/L missense_variant HLA-A02:01 QLIYELYV 456.2 2.50 QLIYESYV 2691.5 6.50 12.4051787003596 Patient_1 11:92533381 ENSG00000165323 ENST00000298047 FAT3 ENSP00000298047 2401 S/L missense_variant HLA-A02:01 NQLIYELYV 105.5 1.10 NQLIYESYV 354.0 2.50 12.4051787003596 Patient_1 11:92533381 ENSG00000165323 ENST00000298047 FAT3 ENSP00000298047 2401 S/L missense_variant HLA-A02:01 FNQLIYELYV 64.6 0.80 FNQLIYESYV 122.8 1.20 12.4051787003596 Patient_1 11:92533381 ENSG00000165323 ENST00000298047 FAT3 ENSP00000298047 2401 S/L missense_variant HLA-A02:01 LIYELYVSEL 136.9 1.30 LIYESYVSEL 149.6 1.40 12.4051787003596 Patient_1 11:100909933 ENSG00000082175 ENST00000325455 PGR ENSP00000325120 906 P/S missense_variant HLA-A02:01 ALSVEFSEMM 290.8 2.00 ALSVEFPEMM 507.9 3.00 8.13120875948622 Patient_1 11:100909933 ENSG00000082175 ENST00000325455 PGR ENSP00000325120 906 P/S missense_variant HLA-A02:01 SEMMSEVIAA 45.2 0.60 PEMMSEVIAA 2014.0 5.50 8.13120875948622 Patient_1 12:49422867 ENSG00000167548 ENST00000301067 KMT2D ENSP00000301067 4743 L/H missense_variant HLA-A02:01 ALSPVIPHI 8.3 0.09 ALSPVIPLI 7.7 0.08 None Patient_1 11:100909933 ENSG00000082175 ENST00000325455 PGR ENSP00000325120 906 P/S missense_variant HLA-A02:01 FSEMMSEVIAA 39.5 0.50 FPEMMSEVIAA 39.5 0.50 8.13120875948622 Patient_1 12:49422867 ENSG00000167548 ENST00000301067 KMT2D ENSP00000301067 4743 L/H missense_variant HLA-A02:01 RALSPVIPHI 74.5 0.90 RALSPVIPLI 52.8 0.70 None Patient_1 12:49422867 ENSG00000167548 ENST00000301067 KMT2D ENSP00000301067 4743 L/H missense_variant HLA-A02:01 ALSPVIPHIP 296.5 2.00 ALSPVIPLIP 184.4 1.50 None Patient_1 12:58145430 ENSG00000135446 ENST00000257904 CDK4 ENSP00000257904 24 R/L missense_variant HLA-A02:01 ALDPHSGHFV 51.8 0.70 ARDPHSGHFV 27546.2 33.00 21.6843175888307 Patient_1 12:121164919 ENSG00000122971 ENST00000242592 ACADS ENSP00000242592 46 R/Q missense_variant HLA-A02:01 MLLQTCQDFA 186.2 1.60 MLLQTCRDFA 268.0 1.90 16.9788221599853 Patient_1 14:33165251 ENSG00000151320 ENST00000280979 AKAP6 ENSP00000280979 979 E/K missense_variant HLA-A02:01 WLIDMKSLV 12.9 0.17 WLIDMESLV 6.6 0.06 18.6185754916296 Patient_1 14:33165251 ENSG00000151320 ENST00000280979 AKAP6 ENSP00000280979 979 E/K missense_variant HLA-A02:01 DWLIDMKSLV 281.3 2.00 DWLIDMESLV 99.1 1.00 18.6185754916296 Patient_1 14:33165251 ENSG00000151320 ENST00000280979 AKAP6 ENSP00000280979 979 E/K missense_variant HLA-A02:01 WLIDMKSLVM 126.7 1.20 WLIDMESLVM 100.7 1.10 18.6185754916296 Patient_1 14:81557432 ENSG00000165409 ENST00000541158 TSHR ENSP00000441235 138 L/F missense_variant HLA-A02:01 FKMFPDLTKV 8.2 0.09 LKMFPDLTKV 32.3 0.50 9.14565198366003 Patient_1 14:81557432 ENSG00000165409 ENST00000541158 TSHR ENSP00000441235 138 L/F missense_variant HLA-A02:01 FLGIFNTGFKM 404.4 2.50 FLGIFNTGLKM 1555.1 5.00 9.14565198366003 Patient_1 14:81557432 ENSG00000165409 ENST00000541158 TSHR ENSP00000441235 138 L/F missense_variant HLA-A02:01 GFKMFPDLTKV 67.8 0.80 GLKMFPDLTKV 289.4 2.00 9.14565198366003 Patient_1 14:81557432 ENSG00000165409 ENST00000541158 TSHR ENSP00000441235 138 L/F missense_variant HLA-A02:01 FKMFPDLTKVY 192.6 1.60 LKMFPDLTKVY 1874.8 5.50 9.14565198366003 Patient_1 14:105223049 ENSG00000184990 ENST00000329967 SIVA1 ENSP00000329213 141 T/I missense_variant HLA-A02:01 ALCGQCVRI 444.0 2.50 ALCGQCVRT 2850.6 6.50 19.2061415507093 Patient_1 15:34130257 ENSG00000198838 ENST00000389232 RYR3 ENSP00000373884 4026 E/K missense_variant HLA-A02:01 VLNYFKPYL 37.8 0.50 VLNYFEPYL 15.0 0.20 11.0933185201387 Patient_1 15:34130257 ENSG00000198838 ENST00000389232 RYR3 ENSP00000373884 4026 E/K missense_variant HLA-A02:01 SVLNYFKPYL 130.9 1.20 SVLNYFEPYL 82.6 0.90 11.0933185201387 Patient_1 15:45401013 ENSG00000140279 ENST00000603300 DUOX2 ENSP00000475084 458 D/N missense_variant HLA-A02:01 NLNPNVDPQV 451.5 2.50 DLNPNVDPQV 8429.0 12.00 7.48376741796077 Patient_1 16:23096224 ENSG00000103404 ENST00000219689 USP31 ENSP00000219689 596 C/Y missense_variant HLA-A02:01 YTLSQCFQL 61.5 0.80 CTLSQCFQL 1906.0 5.50 15.7741641865044 Patient_1 16:31485206 ENSG00000140682 ENST00000394863 TGFB1I1 ENSP00000378332 78 P/L missense_variant HLA-A02:01 APLFSSSSGV 121.5 1.20 APPFSSSSGV 29190.9 35.00 17.2748876951314 Patient_1 16:70351461 ENSG00000157349 ENST00000288071 DDX19B ENSP00000288071 120 E/A missense_variant HLA-A02:01 IQANALPLM 324.6 2.50 IQENALPLM 4092.7 8.00 3.58934403792231 Patient_1 16:74908175 ENSG00000103091 ENST00000262144 WDR59 ENSP00000262144 953 W/G missense_variant HLA-A02:01 MMEGFRTQEV 135.4 1.30 MMEWFRTQEV 21.6 0.30 17.142894818603 Patient_1 16:74908175 ENSG00000103091 ENST00000262144 WDR59 ENSP00000262144 953 W/G missense_variant HLA-A02:01 HMMEGFRTQEV 54.2 0.70 HMMEWFRTQEV 16.5 0.25 17.142894818603 Patient_1 17:8170500 ENSG00000178921 ENST00000314666 PFAS ENSP00000313490 1041 P/L missense_variant HLA-A02:01 GLSYCLPPT 123.5 1.20 GPSYCLPPT 28866.8 35.00 4.10212058954172 Patient_1 17:8170500 ENSG00000178921 ENST00000314666 PFAS ENSP00000313490 1041 P/L missense_variant HLA-A02:01 MGLSYCLPPT 276.0 1.90 MGPSYCLPPT 17363.1 20.00 4.10212058954172 Patient_1 17:21207834 ENSG00000034152 ENST00000342679 MAP2K3 ENSP00000345083 222 T/M missense_variant HLA-A02:01 YLVDSVAKM 13.0 0.17 YLVDSVAKT 40.3 0.60 19.9459252907115 Patient_1 17:21207834 ENSG00000034152 ENST00000342679 MAP2K3 ENSP00000345083 222 T/M missense_variant HLA-A02:01 KMMDAGCKPYM 257.6 1.90 KTMDAGCKPYM 6718.7 11.00 19.9459252907115 Patient_1 17:28530297 ENSG00000108576 ENST00000401766 SLC6A4 ENSP00000385822 571 P/S missense_variant HLA-A02:01 FQYNYSYWS 80.1 0.90 FQYNYPYWS 107.8 1.10 10.2381897521921 Patient_1 17:21207834 ENSG00000034152 ENST00000342679 MAP2K3 ENSP00000345083 222 T/M missense_variant HLA-A02:01 GYLVDSVAKM 470.8 3.00 GYLVDSVAKT 1799.4 5.50 19.9459252907115 Patient_1 17:21207834 ENSG00000034152 ENST00000342679 MAP2K3 ENSP00000345083 222 T/M missense_variant HLA-A02:01 YLVDSVAKMM 69.7 0.80 YLVDSVAKTM 74.0 0.90 19.9459252907115 Patient_1 17:21207834 ENSG00000034152 ENST00000342679 MAP2K3 ENSP00000345083 222 T/M missense_variant HLA-A02:01 MMDAGCKPYM 94.1 1.00 TMDAGCKPYM 594.0 3.00 19.9459252907115 Patient_1 17:28530297 ENSG00000108576 ENST00000401766 SLC6A4 ENSP00000385822 571 P/S missense_variant HLA-A02:01 FQYNYSYWSI 13.9 0.17 FQYNYPYWSI 15.3 0.20 10.2381897521921 Patient_1 17:28530297 ENSG00000108576 ENST00000401766 SLC6A4 ENSP00000385822 571 P/S missense_variant HLA-A02:01 LFQYNYSYWSI 368.3 2.50 LFQYNYPYWSI 482.8 3.00 10.2381897521921 Patient_1 17:28530297 ENSG00000108576 ENST00000401766 SLC6A4 ENSP00000385822 571 P/S missense_variant HLA-A02:01 FQYNYSYWSII 343.8 2.50 FQYNYPYWSII 435.1 2.50 10.2381897521921 Patient_1 17:76471527 ENSG00000187775 ENST00000389840 DNAH17 ENSP00000374490 2768 H/Y missense_variant HLA-A02:01 VLFEDAVAYI 15.1 0.20 VLFEDAVAHI 50.1 0.70 13.2877094941565 Patient_1 17:76471527 ENSG00000187775 ENST00000389840 DNAH17 ENSP00000374490 2768 H/Y missense_variant HLA-A02:01 LVLFEDAVAYI 212.6 1.70 LVLFEDAVAHI 899.5 4.00 13.2877094941565 Patient_1 18:6975034 ENSG00000101680 ENST00000389658 LAMA1 ENSP00000374309 2164 S/F missense_variant,splice_region_variant HLA-A02:01 STAFDFLAV 100.6 1.10 STASDFLAV 85.5 0.90 18.2832828244128 Patient_1 18:6975034 ENSG00000101680 ENST00000389658 LAMA1 ENSP00000374309 2164 S/F missense_variant,splice_region_variant HLA-A02:01 YLGSSTAFDFL 319.4 2.50 YLGSSTASDFL 455.6 2.50 18.2832828244128 Patient_1 19:38190161 ENSG00000198182 ENST00000355202 ZNF607 ENSP00000347338 291 R/C missense_variant HLA-A02:01 KAFCQFSHLV 190.8 1.60 KAFRQFSHLV 854.7 3.50 13.0501513475274 Patient_1 19:47260106 ENSG00000181027 ENST00000318584 FKRP ENSP00000326570 467 R/C missense_variant HLA-A02:01 CFLELKFGPGV 233.0 1.80 RFLELKFGPGV 233.0 1.80 17.4624223904779 Patient_1 19:47968991 ENSG00000118160 ENST00000236877 SLC8A2 ENSP00000236877 224 V/I missense_variant HLA-A02:01 ILAVFSPGVI 74.1 0.90 ILAVFSPGVV 30.0 0.40 13.5554519083266 Patient_1 19:47968991 ENSG00000118160 ENST00000236877 SLC8A2 ENSP00000236877 224 V/I missense_variant HLA-A02:01 AVFSPGVIQV 98.5 1.00 AVFSPGVVQV 115.2 1.10 13.5554519083266 Patient_1 19:47968991 ENSG00000118160 ENST00000236877 SLC8A2 ENSP00000236877 224 V/I missense_variant HLA-A02:01 IQVWEALLTL 104.1 1.10 VQVWEALLTL 171.7 1.50 13.5554519083266 Patient_1 20:30898398 ENSG00000101350 ENST00000375712 KIF3B ENSP00000364864 273 S/F missense_variant HLA-A02:01 KINLSLFAL 155.9 1.40 KINLSLSAL 1305.6 4.50 18.85121527531 Patient_1 20:30898398 ENSG00000101350 ENST00000375712 KIF3B ENSP00000364864 273 S/F missense_variant HLA-A02:01 SLFALGNVI 220.9 1.70 SLSALGNVI 929.6 4.00 18.85121527531 Patient_1 20:30898398 ENSG00000101350 ENST00000375712 KIF3B ENSP00000364864 273 S/F missense_variant HLA-A02:01 FALGNVISA 116.2 1.20 SALGNVISA 1878.7 5.50 18.85121527531 Patient_1 20:30898398 ENSG00000101350 ENST00000375712 KIF3B ENSP00000364864 273 S/F missense_variant HLA-A02:01 NLSLFALGNV 159.8 1.40 NLSLSALGNV 228.6 1.70 18.85121527531 Patient_1 20:30898398 ENSG00000101350 ENST00000375712 KIF3B ENSP00000364864 273 S/F missense_variant HLA-A02:01 FALGNVISAL 75.3 0.90 SALGNVISAL 699.0 3.50 18.85121527531 Patient_1 X:50090685 ENSG00000147082 ENST00000376042 CCNB3 ENSP00000365210 1291 Q/K missense_variant HLA-A02:01 MTLKEYHYV 50.6 0.70 MTLQEYHYV 56.8 0.70 11.7858202472076 Patient_1 X:54574665 ENSG00000130119 ENST00000336470 GNL3L ENSP00000338573 212 R/C missense_variant HLA-A02:01 NLNCCSVPV 20.9 0.30 NLNRCSVPV 59.8 0.70 19.3868981571263 Patient_1 X:54574665 ENSG00000130119 ENST00000336470 GNL3L ENSP00000338573 212 R/C missense_variant HLA-A02:01 KNLNCCSVPV 39.5 0.50 KNLNRCSVPV 145.3 1.30 19.3868981571263 Patient_1 X:72347601 ENSG00000204118 ENST00000373518 NAP1L6 ENSP00000362617 41 E/K missense_variant HLA-A02:01 FIKSLPLV 390.6 2.50 FIESLPLV 52.5 0.70 1.70395560639941 Patient_1 X:54574665 ENSG00000130119 ENST00000336470 GNL3L ENSP00000338573 212 R/C missense_variant HLA-A02:01 VKNLNCCSVPV 400.0 2.50 VKNLNRCSVPV 1845.7 5.50 19.3868981571263 Patient_1 X:72347601 ENSG00000204118 ENST00000373518 NAP1L6 ENSP00000362617 41 E/K missense_variant HLA-A02:01 FIKSLPLVV 381.3 2.50 FIESLPLVV 154.5 1.40 1.70395560639941 Patient_1 X:100507599 ENSG00000102385 ENST00000395209 DRP2 ENSP00000378635 624 R/Q missense_variant HLA-A02:01 YQSLKQFNV 74.4 0.90 YRSLKQFNV 19933.4 23.00 11.3325736815778 Patient_1 X:130410102 ENSG00000147255 ENST00000370903 IGSF1 ENSP00000359940 915 G/E missense_variant HLA-A02:01 ALLQEEAHV 70.5 0.80 ALLQEGAHV 81.0 0.90 11.1274849687475 Patient_1 X:130410102 ENSG00000147255 ENST00000370903 IGSF1 ENSP00000359940 915 G/E missense_variant HLA-A02:01 FALLQEEAHV 77.2 0.90 FALLQEGAHV 82.5 0.90 11.1274849687475 Patient_1 X:130410102 ENSG00000147255 ENST00000370903 IGSF1 ENSP00000359940 915 G/E missense_variant HLA-A02:01 LLQEEAHVPL 184.1 1.50 LLQEGAHVPL 138.1 1.30 11.1274849687475 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 GMYASSYII 32.2 0.50 GMYASSYMI 11.1 0.15 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 YASSYIILA 230.4 1.80 YASSYMILA 272.7 1.90 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 MVGMYASSYI 390.4 2.50 MVGMYASSYM 2660.7 6.50 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 VGMYASSYII 302.3 2.00 VGMYASSYMI 105.1 1.10 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 GMYASSYIIL 200.2 1.60 GMYASSYMIL 79.0 0.90 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 MVGMYASSYII 410.0 2.50 MVGMYASSYMI 138.8 1.30 16.1082630753043 Patient_1 X:153171347 ENSG00000126895 ENST00000358927 AVPR2 ENSP00000351805 129 M/I missense_variant HLA-A02:01 GMYASSYIILA 493.9 3.00 GMYASSYMILA 585.5 3.00 16.1082630753043 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 YTILTPVLNPI 124.1 1.20 YTILTPMLNPI 191.3 1.60 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 ILTPVLNPI 13.6 0.17 ILTPMLNPI 17.0 0.25 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 VLNPIIYSL 5.9 0.05 MLNPIIYSL 3.0 0.01 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 AVFYTILTPV 22.7 0.30 AVFYTILTPM 960.0 4.00 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 TILTPVLNPI 171.8 1.50 TILTPMLNPI 235.4 1.80 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 ILTPVLNPII 94.7 1.00 ILTPMLNPII 123.7 1.20 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 PVLNPIIYSL 79.9 0.90 PMLNPIIYSL 22.6 0.30 10.3966475904886 Patient_1 1:248263524 ENSG00000196071 ENST00000366478 OR2L13 ENSP00000355434 283 M/V missense_variant HLA-A02:01 VLNPIIYSLR 194.1 1.60 MLNPIIYSLR 47.2 0.60 10.3966475904886 Patient_1 1:247921378 ENSG00000221888 ENST00000408896 OR1C1 ENSP00000386138 111 D/N missense_variant HLA-A02:01 FVNMNSLLLCV 151.3 1.40 FVNMDSLLLCV 122.3 1.20 9.51944165278604 Patient_1 1:247921378 ENSG00000221888 ENST00000408896 OR1C1 ENSP00000386138 111 D/N missense_variant HLA-A02:01 FVSFVNMNSL 258.3 1.90 FVSFVNMDSL 258.3 1.90 9.51944165278604 Patient_1 1:247921378 ENSG00000221888 ENST00000408896 OR1C1 ENSP00000386138 111 D/N missense_variant HLA-A02:01 VNMNSLLLCV 101.6 1.10 VNMDSLLLCV 102.7 1.10 9.51944165278604 Patient_1 1:247921378 ENSG00000221888 ENST00000408896 OR1C1 ENSP00000386138 111 D/N missense_variant HLA-A02:01 FVNMNSLLL 195.6 1.60 FVNMDSLLL 220.9 1.70 9.51944165278604 Patient_1 1:247921378 ENSG00000221888 ENST00000408896 OR1C1 ENSP00000386138 111 D/N missense_variant HLA-A02:01 NMNSLLLCV 27.6 0.40 NMDSLLLCV 24.2 0.40 9.51944165278604 Patient_1 1:205902150 ENSG00000174502 ENST00000367134 SLC26A9 ENSP00000356102 63 P/L missense_variant HLA-A02:01 LLPVLSWLL 17.3 0.25 LLPVLSWLP 3783.2 7.50 10.9663107722739 Patient_1 1:205902150 ENSG00000174502 ENST00000367134 SLC26A9 ENSP00000356102 63 P/L missense_variant HLA-A02:01 FGLLPVLSWLL 127.1 1.20 FGLLPVLSWLP 295.9 2.00 10.9663107722739 Patient_1 1:205902150 ENSG00000174502 ENST00000367134 SLC26A9 ENSP00000356102 63 P/L missense_variant HLA-A02:01 GLLPVLSWLL 15.2 0.20 GLLPVLSWLP 252.8 1.80 10.9663107722739 Patient_1 1:205902150 ENSG00000174502 ENST00000367134 SLC26A9 ENSP00000356102 63 P/L missense_variant HLA-A02:01 VLSWLLKYKI 240.5 1.80 VLSWLPKYKI 583.9 3.00 10.9663107722739 Patient_1 1:176833526 ENSG00000152092 ENST00000361833 ASTN1 ENSP00000354536 1260 P/L missense_variant HLA-A02:01 KLYGLDWA 453.5 2.50 KPYGLDWA 37210.0 55.00 13.8932825678674 Patient_1 1:176833526 ENSG00000152092 ENST00000361833 ASTN1 ENSP00000354536 1260 P/L missense_variant HLA-A02:01 KLYGLDWAEL 18.6 0.25 KPYGLDWAEL 16959.4 20.00 13.8932825678674 Patient_1 1:176833526 ENSG00000152092 ENST00000361833 ASTN1 ENSP00000354536 1260 P/L missense_variant HLA-A02:01 IKLYGLDWAEL 217.6 1.70 IKPYGLDWAEL 32219.7 41.00 13.8932825678674 Patient_1 1:176833526 ENSG00000152092 ENST00000361833 ASTN1 ENSP00000354536 1260 P/L missense_variant HLA-A02:01 KLYGLDWAELS 492.2 3.00 KPYGLDWAELS 34788.6 47.00 13.8932825678674